User:-Zest/妹妹/寶生柚璃奈

<ǃ-- 舊版模

The tree of life as depicted by Ernst Haeckel in The Evolution of Man (1879) illustrates the 19th-century view of evolution as a progressive process leading towards man.[1]

Template:Evolutionary biology -->

<ǃ--新板模

德國生物學家恩斯特·海克爾在《人類的進化》(1879年)一書中所描述的生命之樹英语Tree of life (biology)#Haeckel's tree of life說明了19世紀進化論的觀點,即是人類的進化是一個定向演化的過程[2]

-->


<ǃ--原內容--> 演化思想史是對於生物個體在不同世代之間具有差異的現象所做的一種解釋,最早起源可追溯至古希臘古羅馬時代。此外古代中國雖然也有類似演化宇宙觀,但是並沒有用來直接描述生命的變化。公元前6世紀,古希臘學者阿那克西曼德提出人類的祖先來自海中的理論。

科學式的演化論述則一直要到18世紀與19世紀才出現,例如蒙博杜(Lord Monboddo)與伊拉斯謨斯·達爾文(Erasmus Darwin,達爾文的祖父),提出所有生命源自共同祖先的想法。而第一個科學假說是由拉馬克在1809年所提出,他認為演化是來自後天獲得特徵的遺傳。拉馬克學說在提出後將近50年,才被達爾文華萊士較接近現代觀念的理論所取代。其中達爾文做了較多細節上的討論,例如1859年出版的《物種源起》。達爾文強調生物的演化為事實,並以天擇機制作為解釋演化現象的理論。

達爾文在提出演化論時並不知道遺傳機制如何運作,而孟德爾在1865年發表的遺傳定律則一直受到忽略。直到20世紀,達爾文的天擇理論與孟德爾的遺傳學才結合為現今所熟知的現代綜合理論。隨後科學家發現基因為遺傳物質,並發現基因由DNA所構成。現在的演化研究以基因為中心,並發展出許多相關學門。

演化思想物種隨時間演化的概念,最早起源可追溯至古希臘古羅馬古中國中世紀伊斯蘭世界。 隨者17世紀末現代生物分类学的開始,兩個反對思想影響了西方文化生物思維:一是本質主義相信每個物種都有不可改變的本質特徵,這是一種中世紀亞里士多德 形上学發展而來的概念,與自然神学相適應。並開發了新的反亞里士多德式的現代科學 隨著啟蒙時代運動的發展,進化宇宙学機械唯物論機械哲學從物理科學傳播到自然史。自然主義者開始關注物種的變異性,古生物學與滅絕概念的出現進一步削弱了自然界的靜態觀念。19世紀初,拉马克 (1744 – 1829) 提出了他的物種演變英语transmutation of species拉馬克學說 第一個完全形成的進化論。

Evolutionary thought, the conception that species change over time, has roots in antiquity - in the ideas of the ancient Greeks, Romans, and Chinese as well as in medieval Islamic science. With the beginnings of modern biological taxonomy in the late 17th century, two opposed ideas influenced Western biological thinking:  essentialism, the belief that every species has essential characteristics that are unalterable, a concept which had developed from medieval Aristotelian metaphysics, and that fit well with natural theology; and  the development of the new anti-Aristotelian approach to modern science: as the Enlightenment progressed, evolutionary cosmology and the mechanical philosophy spread from the physical sciences to natural history. Naturalists began to focus on the variability of species; the emergence of paleontology with the concept of extinction further undermined static views of nature. In the early 19th century Jean-Baptiste Lamarck (1744 – 1829) proposed his theory of the transmutation of species, the first fully formed theory of evolution.

1858年,查爾斯·達爾文阿爾弗雷德·羅素·華萊士發表了一個新的進化論,在達爾文的物種起源(1859年)中有詳細解釋。與拉馬克不同,達爾文提出了共同起源生命之樹英语Tree of life (biology),這意味著兩個非常不同的物種有共同的祖先。達爾文基於自然選擇理論:它綜合了畜牧业生物地理学地质学形態學胚胎学等多種證據。

達爾文提出的理論因為缺乏遺傳機制如何運作的概念,因此備受爭論。但他提出了具體的理論天擇說,並沒有被廣泛接受,直到它在生物學發展到1920到1940年代才被注意到。並演變成現在的現代綜合理論。在此之前,大多數生物學家認為其他因素影響演化。在「達爾文理論的衰落英语the eclipse of Darwinism」(1880年至1920年)期間提出的自然選擇的替代方案包括獲得性特徵的遺傳(新拉馬克主義英语Lamarckism#Ideological_neo-Lamarckism),一種天生的演化能力(定向演化)和急劇的大型突變(突然変異説英语Mutationism)。

孟德爾遺傳學羅納德·費雪约翰·伯顿·桑德森·霍尔丹休厄尔·赖特天擇理論相結合,在1910年代到1930年代,並成立了群体遗传学的新學科。在20世紀30年代和40年代的群體遺傳學成為與其他生物領域的集成,其涵蓋了大量的生物學 - 现代演化综论

In 1858 Charles Darwin and Alfred Russel Wallace published a new evolutionary theory, explained in detail in Darwin's On the Origin of Species (1859). Unlike Lamarck, Darwin proposed common descent and a branching tree of life, meaning that two very different species could share a common ancestor. Darwin based his theory on the idea of natural selection: it synthesized a broad range of evidence from animal husbandry, biogeography, geology, morphology, and embryology. Debate over Darwin's work led to the rapid acceptance of the general concept of evolution, but the specific mechanism he proposed, natural selection, was not widely accepted until it was revived by developments in biology that occurred during the 1920s through the 1940s. Before that time most biologists regarded other factors as responsible for evolution. Alternatives to natural selection suggested during "the eclipse of Darwinism" (c. 1880 to 1920) included inheritance of acquired characteristics (neo-Lamarckism), an innate drive for change (orthogenesis), and sudden large mutations (saltationism). Mendelian genetics, a series of 19th-century experiments with pea plant variations rediscovered in 1900, was integrated with natural selection by Ronald Fisher, J. B. S. Haldane, and Sewall Wright during the 1910s to 1930s, and resulted in the founding of the new discipline of population genetics. During the 1930s and 1940s population genetics became integrated with other biological fields, resulting in a widely applicable theory of evolution that encompassed much of biology—the modern synthesis.

隨著進化生物學的發展,自然種群中突變和遺傳多樣性的研究,因為演化的複雜數學和因果關係,結合生物地理學系統學演化生命史英语evolutionary history of life能藉由古生物學比較解剖學的發展使其更完善。

分子遺傳學在1950年代興起之後進入分子演化的領域發展,基於蛋白質一級結構免疫學的實驗,之後加入RNADNA的研究。

在1960年代以基因為中心的基因選擇理論英语gene-centered view of evolution看法出現,接者是中性演化理論,引發了對適應主義英语adaptationism的爭議,選擇單位英语unit of selection遗传漂变天擇理論才是演化的主要原因。[3] 在二十世紀後期,DNA測序使得分子系统发生学和生命之樹演變成卡尔·乌斯提出的三域系統。另外共生體學說基因水平轉移的認知與其複雜性成為進化理論。 演化生物學的發現不僅大大影響在生物學的傳統分支,也對其他學科(例如演化人類學演化心理學)以及整個社會產生了重大影響。[4]

Following the establishment of evolutionary biology, studies of mutation and genetic diversity in natural populations, combined with biogeography and systematics, led to sophisticated mathematical and causal models of evolution. Paleontology and comparative anatomy allowed more detailed reconstructions of the evolutionary history of life. After the rise of molecular genetics in the 1950s, the field of molecular evolution developed, based on protein sequences and immunological tests, and later incorporating RNA and DNA studies. The gene-centered view of evolution rose to prominence in the 1960s, followed by the neutral theory of molecular evolution, sparking debates over adaptationism, the unit of selection, and the relative importance of genetic drift versus natural selection as causes of evolution.[5] In the late 20th-century, DNA sequencing led to molecular phylogenetics and the reorganization of the tree of life into the three-domain system by Carl Woese. In addition, the newly recognized factors of symbiogenesis and horizontal gene transfer introduced yet more complexity into evolutionary theory. Discoveries in evolutionary biology have made a significant impact not just within the traditional branches of biology, but also in other academic disciplines (for example: anthropology and psychology) and on society at large.[4]


完成線


以下裁切段

Antiquity

Greeks

Proposals that one type of animal, even humans, could descend from other types of animals, are known to go back to the first pre-Socratic Greek philosophers. Anaximander of Miletus (c. 610 – 546 BC) proposed that the first animals lived in water, during a wet phase of the Earth's past, and that the first land-dwelling ancestors of mankind must have been born in water, and only spent part of their life on land. He also argued that the first human of the form known today must have been the child of a different type of animal, because man needs prolonged nursing to live.[6] Empedocles (c. 490 – 430 BC), argued that what we call birth and death in animals are just the mingling and separations of elements which cause the countless "tribes of mortal things."[7] Specifically, the first animals and plants were like disjointed parts of the ones we see today, some of which survived by joining in different combinations, and then intermixing during the development of the embryo,[a] and where "everything turned out as it would have if it were on purpose, there the creatures survived, being accidentally compounded in a suitable way."[8] Other philosophers who became more influential in the Middle Ages, including Plato (c. 428/427 – 348/347 BC), Aristotle (384 – 322 BC), and members of the Stoic school of philosophy, believed that the types of all things, not only living things, were fixed by divine design.

 
Plato (left) and Aristotle (right), a detail from The School of Athens (1509–1511) by Raphael

Plato was called by biologist Ernst Mayr "the great antihero of evolutionism,"[9] because he promoted belief in essentialism, which is also referred to as the theory of Forms. This theory holds that each natural type of object in the observed world is an imperfect manifestation of the ideal, form or "species" which defines that type. In his Timaeus for example, Plato has a character tell a story that the Demiurge created the cosmos and everything in it because, being good, and hence, "... free from jealousy, He desired that all things should be as like Himself as they could be." The creator created all conceivable forms of life, since "... without them the universe will be incomplete, for it will not contain every kind of animal which it ought to contain, if it is to be perfect." This "principle of plenitude"—the idea that all potential forms of life are essential to a perfect creation—greatly influenced Christian thought.[10] However some historians of science have questioned how much influence Plato's essentialism had on natural philosophy by stating that many philosophers after Plato believed that species might be capable of transformation and that the idea that biologic species were fixed and possessed unchangeable essential characteristics did not become important until the beginning of biological taxonomy in the 17th and 18th centuries.[11]

Aristotle, the most influential of the Greek philosophers in Europe in the Middle Ages, was a student of Plato and is also the earliest natural historian whose work has been preserved in any real detail. His writings on biology resulted from his research into natural history on and around the island of Lesbos, and have survived in the form of four books, usually known by their Latin names, De anima (On the Soul), Historia animalium (History of Animals), De generatione animalium (Generation of Animals), and De partibus animalium (On the Parts of Animals). Aristotle's works contain accurate observations, fitted into his own theories of the body's mechanisms.[12] However, for Charles Singer, "Nothing is more remarkable than [Aristotle's] efforts to [exhibit] the relationships of living things as a scala naturae."[12] This scala naturae, described in Historia animalium, classified organisms in relation to a hierarchical "Ladder of Life" or "great chain of being," placing them according to their complexity of structure and function, with organisms that showed greater vitality and ability to move described as "higher organisms."[10] Aristotle believed that features of living organisms showed clearly that they must have had what he called a final cause, that is to say that they had been designed for a purpose.[13] He explicitly rejected the view of Empedocles that living creatures might have originated by chance.[14]
Other Greek philosophers, such as Zeno of Citium (334 – 262 BC) the founder of the Stoic school of philosophy, agreed with Aristotle and other earlier philosophers that nature showed clear evidence of being designed for a purpose; this view is known as teleology.[15] The Roman Stoic philosopher Cicero (106 – 43 BC) wrote that Zeno was known to have held the view, central to Stoic physics, that nature is primarily "directed and concentrated...to secure for the world...the structure best fitted for survival."[16]
Epicurus (341 – 270 BC) anticipated the idea of natural selection. The Roman philosopher and atomist Lucretius (c. 99 – 55 BC) explicated these ideas in his poem De rerum natura (On the Nature of Things). In the Epicurean system, it was assumed that many living forms had been spontaneously generated from Gaia in the past, but that only the most functional forms had survived to have offspring. The Epicureans did not anticipate the full theory of evolution as we now know it, but seem to have postulated separate abiogenetic events for each species.

以上裁切段


Chinese

Ancient Chinese thinkers such as Zhuang Zhou (c. 369 – 286 BC), a Taoist philosopher, expressed ideas on changing biologic species. According to Joseph Needham, Taoism explicitly denies the fixity of biological species and Taoist philosophers speculated that species had developed differing attributes in response to differing environments.[17] Taoism regards humans, nature and the heavens as existing in a state of "constant transformation" known as the Tao, in contrast with the more static view of nature typical of Western thought.[18]

Romans

Lucretius' poem De rerum natura provides the best surviving explanation of the ideas of the Greek Epicurean philosophers. It describes the development of the cosmos, the Earth, living things, and human society through purely naturalistic mechanisms, without any reference to supernatural involvement. De rerum natura would influence the cosmological and evolutionary speculations of philosophers and scientists during and after the Renaissance.[19][20] This view was in strong contrast with the views of Roman philosophers of the Stoic school such as Cicero, Seneca the Younger (c. 4 BC – AD 65), and Pliny the Elder (23 – 79 AD) who had a strongly teleological view of the natural world that influenced Christian theology.[15] Cicero reports that the peripatetic and Stoic view of nature as an agency concerned most basically with producing life "best fitted for survival" was taken for granted among the Hellenistic elite.[16]

Augustine of Hippo

In line with earlier Greek thought, the 4th-century bishop and theologian, Augustine of Hippo, wrote that the creation story in the Book of Genesis should not be read too literally. In his book De Genesi ad litteram (On the Literal Meaning of Genesis), he stated that in some cases new creatures may have come about through the "decomposition" of earlier forms of life.[21] For Augustine, "plant, fowl and animal life are not perfect ... but created in a state of potentiality," unlike what he considered the theologically perfect forms of angels, the firmament and the human soul.[22] Augustine's idea 'that forms of life had been transformed "slowly over time"' prompted Father Giuseppe Tanzella-Nitti, Professor of Theology at the Pontifical Santa Croce University in Rome, to claim that Augustine had suggested a form of evolution.[23][24]

Henry Fairfield Osborn wrote in From the Greeks to Darwin (1894):

"If the orthodoxy of Augustine had remained the teaching of the Church, the final establishment of Evolution would have come far earlier than it did, certainly during the eighteenth instead of the nineteenth century, and the bitter controversy over this truth of Nature would never have arisen. ...Plainly as the direct or instantaneous Creation of animals and plants appeared to be taught in Genesis, Augustine read this in the light of primary causation and the gradual development from the imperfect to the perfect of Aristotle. This most influential teacher thus handed down to his followers opinions which closely conform to the progressive views of those theologians of the present day who have accepted the Evolution theory."[25]

In A History of the Warfare of Science with Theology in Christendom (1896), Andrew Dickson White wrote about Augustine's attempts to preserve the ancient evolutionary approach to the creation as follows:

"For ages a widely accepted doctrine had been that water, filth, and carrion had received power from the Creator to generate worms, insects, and a multitude of the smaller animals; and this doctrine had been especially welcomed by St. Augustine and many of the fathers, since it relieved the Almighty of making, Adam of naming, and Noah of living in the ark with these innumerable despised species."[26]

In Augustine's De Genesi contra Manichæos, on Genesis he says: "To suppose that God formed man from the dust with bodily hands is very childish. ...God neither formed man with bodily hands nor did he breathe upon him with throat and lips." Augustine suggests in other work his theory of the later development of insects out of carrion, and the adoption of the old emanation or evolution theory, showing that "certain very small animals may not have been created on the fifth and sixth days, but may have originated later from putrefying matter." Concerning Augustine's De Trinitate (On the Trinity), White wrote that Augustine "...develops at length the view that in the creation of living beings there was something like a growth—that God is the ultimate author, but works through secondary causes; and finally argues that certain substances are endowed by God with the power of producing certain classes of plants and animals."[27]

Middle Ages

Islamic philosophy and the struggle for existence

 
A page from the Kitāb al-Hayawān (English: Book of Animals) by al-Jāḥiẓ

Although Greek and Roman evolutionary ideas died out in Europe after the fall of the Roman Empire, they were not lost to Islamic philosophers and scientists. In the Islamic Golden Age of the 8th to the 13th centuries, philosophers explored ideas about natural history. These ideas included transmutation from non-living to living: "from mineral to plant, from plant to animal, and from animal to man."[28]

In the medieval Islamic world, the scholar al-Jāḥiẓ (776 – c. 868) wrote his Book of Animals in the 9th century. Conway Zirkle, writing about the history of natural selection in 1941, said that an excerpt from this work was the only relevant passage he had found from an Arabian scholar. He provided a quotation describing the struggle for existence, citing a Spanish translation of this work: "The rat goes out for its food, and is clever in getting it, for it eats all animals inferior to it in strength," and in turn, it "has to avoid snakes and birds and serpents of prey, who look for it in order to devour it" and are stronger than the rat. Mosquitoes "know instinctively that blood is the thing which makes them live" and when they see an animal, "they know that the skin has been fashioned to serve them as food." In turn, flies hunt the mosquito "which is the food that they like best," and predators eat the flies. "All animals, in short, can not exist without food, neither can the hunting animal escape being hunted in his turn. Every weak animal devours those weaker than itself. Strong animals cannot escape being devoured by other animals stronger than they. And in this respect, men do not differ from animals, some with respect to others, although they do not arrive at the same extremes. In short, God has disposed some human beings as a cause of life for others, and likewise, he has disposed the latter as a cause of the death of the former."[29] Al-Jāḥiẓ also wrote descriptions of food chains.[30]

Some of Ibn Khaldūn's thoughts, according to some commentators, anticipate the biological theory of evolution.[31] In 1377, Ibn Khaldūn wrote the Muqaddimah in which he asserted that humans developed from "the world of the monkeys," in a process by which "species become more numerous"[31] In chapter 1 he writes: "This world with all the created things in it has a certain order and solid construction. It shows nexuses between causes and things caused, combinations of some parts of creation with others, and transformations of some existent things into others, in a pattern that is both remarkable and endless."[32]

The Muqaddimah also states in chapter 6:

"We explained there that the whole of existence in (all) its simple and composite worlds is arranged in a natural order of ascent and descent, so that everything constitutes an uninterrupted continuum. The essences at the end of each particular stage of the worlds are by nature prepared to be transformed into the essence adjacent to them, either above or below them. This is the case with the simple material elements; it is the case with palms and vines, (which constitute) the last stage of plants, in their relation to snails and shellfish, (which constitute) the (lowest) stage of animals. It is also the case with monkeys, creatures combining in themselves cleverness and perception, in their relation to man, the being who has the ability to think and to reflect. The preparedness (for transformation) that exists on either side, at each stage of the worlds, is meant when (we speak about) their connection."[33]

Nasīr al-Dīn Tūsī

In his Akhlaq-i-Nasri, Tusi put forward a basic theory for the evolution of species almost 600 years before Charles Darwin, the English naturalist credited with advancing the idea, was born. He begins his theory of evolution with the universe once consisting of equal and similar elements. According to Tusi, internal contradictions began appearing, and as a result, some substances began developing faster and differently from other substances. He then explains how the elements evolved into minerals, then plants, then animals, and then humans. Tusi then goes on to explain how hereditary variability was an important factor for biological evolution of living things:

"The organisms that can gain the new features faster are more variable. As a result, they gain advantages over other creatures. [...] The bodies are changing as a result of the internal and external interactions."[34]

Tusi discusses how organisms are able to adapt to their environments:

"Look at the world of animals and birds. They have all that is necessary for defense, protection and daily life, including strengths, courage and appropriate tools [organs] [...] Some of these organs are real weapons, [...] For example, horns-spear, teeth and claws-knife and needle, feet and hoofs-cudgel. The thorns and needles of some animals are similar to arrows. [...] Animals that have no other means of defense (as the gazelle and fox) protect themselves with the help of flight and cunning. [...] Some of them, for example, bees, ants and some bird species, have united in communities in order to protect themselves and help each other."[34]

Tusi recognized three types of living things: plants, animals, and humans. He wrote:

"Animals are higher than plants, because they are able to move consciously, go after food, find and eat useful things. [...] There are many differences between the animal and plant species, [...] First of all, the animal kingdom is more complicated. Besides, reason is the most beneficial feature of animals. Owing to reason, they can learn new things and adopt new, non-inherent abilities. For example, the trained horse or hunting falcon...is at a higher point of development in the animal world. The first steps of human perfection begin from here."[34]

Tusi then explains how humans evolved from advanced animals:

"Such humans [probably anthropoid apes] live in the Western Sudan and other distant corners of the world. They are close to animals by their habits, deeds and behavior. [...] The human has features that distinguish him from other creatures, but he has other features that unite him with the animal world, vegetable kingdom or even with the inanimate bodies. [...] Before [the creation of humans], all differences between organisms were of the natural origin. The next step will be associated with spiritual perfection, will, observation and knowledge. [...] All these facts prove that the human being is placed on the middle step of the evolutionary stairway. According to his inherent nature, the human is related to the lower beings, and only with the help of his will can he reach the higher development level."[34]

Christian philosophy and the great chain of being

 
Drawing of the great chain of being from Rhetorica Christiana (English: Christian Rhetoric) (1579) by Diego Valadés

During the Early Middle Ages, Greek classical learning was all but lost to the West. However, contact with the Islamic world, where Greek manuscripts were preserved and expanded, soon led to a massive spate of Latin translations in the 12th century. Europeans were re-introduced to the works of Plato and Aristotle, as well as to Islamic thought. Christian thinkers of the scholastic school, in particular Peter Abelard (1079 – 1142) and Thomas Aquinas (1225 – 1274), combined Aristotelian classification with Plato's ideas of the goodness of God, and of all potential life forms being present in a perfect creation, to organize all inanimate, animate, and spiritual beings into a huge interconnected system: the scala naturae, or great chain of being.[10][35]

Within this system, everything that existed could be placed in order, from "lowest" to "highest," with Hell at the bottom and God at the top—below God, an angelic hierarchy marked by the orbits of the planets, mankind in an intermediate position, and worms the lowest of the animals. As the universe was ultimately perfect, the great chain of being was also perfect. There were no empty links in the chain, and no link was represented by more than one species. Therefore, no species could ever move from one position to another. Thus, in this Christianized version of Plato's perfect universe, species could never change, but remained forever fixed, in accordance with the text of the Book of Genesis. For humans to forget their position was seen as sinful, whether they behaved like lower animals or aspired to a higher station than was given them by their Creator.[10]

Creatures on adjacent steps were expected to closely resemble each other, an idea expressed in the saying: natura non facit saltum ("nature does not make leaps").[10] This basic concept of the great chain of being greatly influenced the thinking of Western civilization for centuries (and still has an influence today). It formed a part of the argument from design presented by natural theology. As a classification system, it became the major organizing principle and foundation of the emerging science of biology in the 17th and 18th centuries.[10]

Thomas Aquinas on creation and natural processes

While Christian theologians held that the natural world was part of an unchanging designed hierarchy, some theologians speculated that the world might have developed through natural processes. Thomas Aquinas went even farther than Augustine of Hippo in arguing that scriptural texts like Genesis should not be interpreted in a literal way that conflicted with or constrained what natural philosophers learned about the workings of the natural world. He saw that the autonomy of nature was a sign of God's goodness, and detected no conflict between a divinely created universe and the idea that the universe had developed over time through natural mechanisms.[36] However, Aquinas disputed the views of those (like the ancient Greek philosopher Empedocles) who held that such natural processes showed that the universe could have developed without an underlying purpose. Aquinas rather held that: "Hence, it is clear that nature is nothing but a certain kind of art, i.e., the divine art, impressed upon things, by which these things are moved to a determinate end. It is as if the shipbuilder were able to give to timbers that by which they would move themselves to take the form of a ship."[37]

Renaissance and Enlightenment

 
Pierre Belon compared the skeletons of humans (left) and birds (right) in his L'Histoire de la nature des oyseaux (English: The Natural History of Birds) (1555)

In the first half of the 17th century, René Descartes' mechanical philosophy encouraged the use of the metaphor of the universe as a machine, a concept that would come to characterise the scientific revolution.[38] Between 1650 and 1800, some naturalists, such as Benoît de Maillet, produced theories that maintained that the universe, the Earth, and life, had developed mechanically, without divine guidance.[39] In contrast, most contemporary theories of evolution, such of those of Gottfried Leibniz and Johann Gottfried Herder, regarded evolution as a fundamentally spiritual process.[40] In 1751, Pierre Louis Maupertuis veered toward more materialist ground. He wrote of natural modifications occurring during reproduction and accumulating over the course of many generations, producing races and even new species, a description that anticipated in general terms the concept of natural selection.[41]

Maupertuis' ideas were in opposition to the influence of early taxonomists like John Ray. In the late 17th century, Ray had given the first formal definition of a biological species, which he described as being characterized by essential unchanging features, and stated the seed of one species could never give rise to another.[11] The ideas of Ray and other 17th-century taxonomists were influenced by natural theology and the argument from design.[42]

The word evolution (from the Latin evolutio, meaning "to unroll like a scroll") was initially used to refer to embryological development; its first use in relation to development of species came in 1762, when Charles Bonnet used it for his concept of "pre-formation," in which females carried a miniature form of all future generations. The term gradually gained a more general meaning of growth or progressive development.[43]

Later in the 18th century, the French philosopher Georges-Louis Leclerc, Comte de Buffon, one of the leading naturalists of the time, suggested that what most people referred to as species were really just well-marked varieties, modified from an original form by environmental factors. For example, he believed that lions, tigers, leopards and house cats might all have a common ancestor. He further speculated that the 200 or so species of mammals then known might have descended from as few as 38 original animal forms. Buffon's evolutionary ideas were limited; he believed each of the original forms had arisen through spontaneous generation and that each was shaped by "internal moulds" that limited the amount of change. Buffon's works, Histoire naturelle (1749–1789) and Époques de la nature (1778), containing well-developed theories about a completely materialistic origin for the Earth and his ideas questioning the fixity of species, were extremely influential.[44][45] Another French philosopher, Denis Diderot, also wrote that living things might have first arisen through spontaneous generation, and that species were always changing through a constant process of experiment where new forms arose and survived or not based on trial and error; an idea that can be considered a partial anticipation of natural selection.[46] Between 1767 and 1792, James Burnett, Lord Monboddo, included in his writings not only the concept that man had descended from primates, but also that, in response to the environment, creatures had found methods of transforming their characteristics over long time intervals.[47] Charles Darwin's grandfather, Erasmus Darwin, published Zoonomia (1794–1796) which suggested that "all warm-blooded animals have arisen from one living filament."[48] In his poem Temple of Nature (1803), he described the rise of life from minute organisms living in mud to all of its modern diversity.[49]

Early 19th century

 
Diagram of the geologic timescale from Palæontology (1861) by Richard Owen showing the appearance of major animal types[50]

Paleontology and geology

In 1796, Georges Cuvier published his findings on the differences between living elephants and those found in the fossil record. His analysis identified mammoths and mastodons as distinct species, different from any living animal, and effectively ended a long-running debate over whether a species could become extinct.[51] In 1788, James Hutton described gradual geological processes operating continuously over deep time.[52] In the 1790s, William Smith began the process of ordering rock strata by examining fossils in the layers while he worked on his geologic map of England. Independently, in 1811, Cuvier and Alexandre Brongniart published an influential study of the geologic history of the region around Paris, based on the stratigraphic succession of rock layers. These works helped establish the antiquity of the Earth.[53] Cuvier advocated catastrophism to explain the patterns of extinction and faunal succession revealed by the fossil record.

Knowledge of the fossil record continued to advance rapidly during the first few decades of the 19th century. By the 1840s, the outlines of the geologic timescale were becoming clear, and in 1841 John Phillips named three major eras, based on the predominant fauna of each: the Paleozoic, dominated by marine invertebrates and fish, the Mesozoic, the age of reptiles, and the current Cenozoic age of mammals. This progressive picture of the history of life was accepted even by conservative English geologists like Adam Sedgwick and William Buckland; however, like Cuvier, they attributed the progression to repeated catastrophic episodes of extinction followed by new episodes of creation.[54] Unlike Cuvier, Buckland and some other advocates of natural theology among British geologists made efforts to explicitly link the last catastrophic episode proposed by Cuvier to the biblical flood.[55][56]

From 1830 to 1833, geologist Charles Lyell published his multi-volume work Principles of Geology, which, building on Hutton's ideas, advocated a uniformitarian alternative to the catastrophic theory of geology. Lyell claimed that, rather than being the products of cataclysmic (and possibly supernatural) events, the geologic features of the Earth are better explained as the result of the same gradual geologic forces observable in the present day—but acting over immensely long periods of time. Although Lyell opposed evolutionary ideas (even questioning the consensus that the fossil record demonstrates a true progression), his concept that the Earth was shaped by forces working gradually over an extended period, and the immense age of the Earth assumed by his theories, would strongly influence future evolutionary thinkers such as Charles Darwin.[57]

Transmutation of species

 
Diagram from Vestiges of the Natural History of Creation (1844) by Robert Chambers shows a model of development where fish (F), reptiles (R), and birds (B) represent branches from a path leading to mammals (M)

Jean-Baptiste Lamarck proposed, in his Philosophie Zoologique of 1809, a theory of the transmutation of species (transformisme). Lamarck did not believe that all living things shared a common ancestor but rather that simple forms of life were created continuously by spontaneous generation. He also believed that an innate life force drove species to become more complex over time, advancing up a linear ladder of complexity that was related to the great chain of being. Lamarck recognized that species adapted to their environment. He explained this by saying that the same innate force driving increasing complexity caused the organs of an animal (or a plant) to change based on the use or disuse of those organs, just as exercise affects muscles. He argued that these changes would be inherited by the next generation and produce slow adaptation to the environment. It was this secondary mechanism of adaptation through the inheritance of acquired characteristics that would become known as Lamarckism and would influence discussions of evolution into the 20th century.[58][59]

A radical British school of comparative anatomy that included the anatomist Robert Edmond Grant was closely in touch with Lamarck's French school of Transformationism. One of the French scientists who influenced Grant was the anatomist Étienne Geoffroy Saint-Hilaire, whose ideas on the unity of various animal body plans and the homology of certain anatomical structures would be widely influential and lead to intense debate with his colleague Georges Cuvier. Grant became an authority on the anatomy and reproduction of marine invertebrates. He developed Lamarck's and Erasmus Darwin's ideas of transmutation and evolutionism, and investigated homology, even proposing that plants and animals had a common evolutionary starting point. As a young student, Charles Darwin joined Grant in investigations of the life cycle of marine animals. In 1826, an anonymous paper, probably written by Robert Jameson, praised Lamarck for explaining how higher animals had "evolved" from the simplest worms; this was the first use of the word "evolved" in a modern sense.[60][61]

In 1844, the Scottish publisher Robert Chambers anonymously published an extremely controversial but widely read book entitled Vestiges of the Natural History of Creation. This book proposed an evolutionary scenario for the origins of the Solar System and of life on Earth. It claimed that the fossil record showed a progressive ascent of animals, with current animals branching off a main line that leads progressively to humanity. It implied that the transmutations lead to the unfolding of a preordained plan that had been woven into the laws that governed the universe. In this sense it was less completely materialistic than the ideas of radicals like Grant, but its implication that humans were only the last step in the ascent of animal life incensed many conservative thinkers. The high profile of the public debate over Vestiges, with its depiction of evolution as a progressive process, would greatly influence the perception of Darwin's theory a decade later.[62][63]

Ideas about the transmutation of species were associated with the radical materialism of the Enlightenment and were attacked by more conservative thinkers. Cuvier attacked the ideas of Lamarck and Geoffroy, agreeing with Aristotle that species were immutable. Cuvier believed that the individual parts of an animal were too closely correlated with one another to allow for one part of the anatomy to change in isolation from the others, and argued that the fossil record showed patterns of catastrophic extinctions followed by repopulation, rather than gradual change over time. He also noted that drawings of animals and animal mummies from Egypt, which were thousands of years old, showed no signs of change when compared with modern animals. The strength of Cuvier's arguments and his scientific reputation helped keep transmutational ideas out of the mainstream for decades.[64]

 
This 1848 diagram by Richard Owen shows his conceptual archetype for all vertebrates.[65]

In Great Britain, the philosophy of natural theology remained influential. William Paley's 1802 book Natural Theology with its famous watchmaker analogy had been written at least in part as a response to the transmutational ideas of Erasmus Darwin.[66] Geologists influenced by natural theology, such as Buckland and Sedgwick, made a regular practice of attacking the evolutionary ideas of Lamarck, Grant, and Vestiges.[67][68] Although Charles Lyell opposed scriptural geology, he also believed in the immutability of species, and in his Principles of Geology, he criticized Lamarck's theories of development.[57] Idealists such as Louis Agassiz and Richard Owen believed that each species was fixed and unchangeable because it represented an idea in the mind of the creator. They believed that relationships between species could be discerned from developmental patterns in embryology, as well as in the fossil record, but that these relationships represented an underlying pattern of divine thought, with progressive creation leading to increasing complexity and culminating in humanity. Owen developed the idea of "archetypes" in the Divine mind that would produce a sequence of species related by anatomical homologies, such as vertebrate limbs. Owen led a public campaign that successfully marginalized Grant in the scientific community. Darwin would make good use of the homologies analyzed by Owen in his own theory, but the harsh treatment of Grant, and the controversy surrounding Vestiges, showed him the need to ensure that his own ideas were scientifically sound.[61][69][70]

Anticipations of natural selection

It is possible to look through the history of biology from the ancient Greeks onwards and discover anticipations of almost all of Charles Darwin's key ideas. For example, Loren Eiseley has found isolated passages written by Buffon suggesting he was almost ready to piece together a theory of natural selection, but states that such anticipations should not be taken out of the full context of the writings or of cultural values of the time which made Darwinian ideas of evolution unthinkable.[71]

When Darwin was developing his theory, he investigated selective breeding and was impressed by Sebright's observation that "A severe winter, or a scarcity of food, by destroying the weak and the unhealthy, has all the good effects of the most skilful selection" so that "the weak and the unhealthy do not live to propagate their infirmities."[72] Darwin was influenced by Charles Lyell's ideas of environmental change causing ecological shifts, leading to what Augustin de Candolle had called a war between competing plant species, competition well described by the botanist William Herbert. Darwin was struck by Thomas Robert Malthus' phrase "struggle for existence" used of warring human tribes.[73][74]

Several writers anticipated evolutionary aspects of Darwin's theory, and in the third edition of On the Origin of Species published in 1861 Darwin named those he knew about in an introductory appendix, An Historical Sketch of the Recent Progress of Opinion on the Origin of Species, which he expanded in later editions.[75]

In 1813, William Charles Wells read before the Royal Society essays assuming that there had been evolution of humans, and recognising the principle of natural selection. Darwin and Alfred Russel Wallace were unaware of this work when they jointly published the theory in 1858, but Darwin later acknowledged that Wells had recognised the principle before them, writing that the paper "An Account of a White Female, part of whose Skin resembles that of a Negro" was published in 1818, and "he distinctly recognises the principle of natural selection, and this is the first recognition which has been indicated; but he applies it only to the races of man, and to certain characters alone."[76]

Patrick Matthew wrote in his book On Naval Timber and Arboriculture (1831) of "continual balancing of life to circumstance. ... [The] progeny of the same parents, under great differences of circumstance, might, in several generations, even become distinct species, incapable of co-reproduction."[77] Darwin implies that he discovered this work after the initial publication of the Origin. In the brief historical sketch that Darwin included in the 3rd edition he says "Unfortunately the view was given by Mr. Matthew very briefly in scattered passages in an Appendix to a work on a different subject ... He clearly saw, however, the full force of the principle of natural selection."[78]

However, as historian of science Peter J. Bowler says, "Through a combination of bold theorizing and comprehensive evaluation, Darwin came up with a concept of evolution that was unique for the time." Bowler goes on to say that simple priority alone is not enough to secure a place in the history of science; someone has to develop an idea and convince others of its importance to have a real impact.[79] Thomas Henry Huxley said in his essay on the reception of On the Origin of Species:

"The suggestion that new species may result from the selective action of external conditions upon the variations from their specific type which individuals present—and which we call "spontaneous," because we are ignorant of their causation—is as wholly unknown to the historian of scientific ideas as it was to biological specialists before 1858. But that suggestion is the central idea of the 'Origin of Species,' and contains the quintessence of Darwinism."[80]

 
Charles Darwin's first sketch of an evolutionary tree from his "B" notebook on the transmutation of species (1837–1838)

Natural selection

The biogeographical patterns Charles Darwin observed in places such as the Galápagos Islands during the second voyage of HMS Beagle caused him to doubt the fixity of species, and in 1837 Darwin started the first of a series of secret notebooks on transmutation. Darwin's observations led him to view transmutation as a process of divergence and branching, rather than the ladder-like progression envisioned by Jean-Baptiste Lamarck and others. In 1838 he read the new 6th edition of An Essay on the Principle of Population, written in the late 18th century by Thomas Robert Malthus. Malthus' idea of population growth leading to a struggle for survival combined with Darwin's knowledge on how breeders selected traits, led to the inception of Darwin's theory of natural selection. Darwin did not publish his ideas on evolution for 20 years. However, he did share them with certain other naturalists and friends, starting with Joseph Dalton Hooker, with whom he discussed his unpublished 1844 essay on natural selection. During this period he used the time he could spare from his other scientific work to slowly refine his ideas and, aware of the intense controversy around transmutation, amass evidence to support them. In September 1854 he began full-time work on writing his book on natural selection.[70][81][82]

Unlike Darwin, Alfred Russel Wallace, influenced by the book Vestiges of the Natural History of Creation, already suspected that transmutation of species occurred when he began his career as a naturalist. By 1855, his biogeographical observations during his field work in South America and the Malay Archipelago made him confident enough in a branching pattern of evolution to publish a paper stating that every species originated in close proximity to an already existing closely allied species. Like Darwin, it was Wallace's consideration of how the ideas of Malthus might apply to animal populations that led him to conclusions very similar to those reached by Darwin about the role of natural selection. In February 1858, Wallace, unaware of Darwin's unpublished ideas, composed his thoughts into an essay and mailed them to Darwin, asking for his opinion. The result was the joint publication in July of an extract from Darwin's 1844 essay along with Wallace's letter. Darwin also began work on a short abstract summarising his theory, which he would publish in 1859 as On the Origin of Species.[83]

 
Diagram by Othniel Charles Marsh of the evolution of horse feet and teeth over time as reproduced in Thomas Henry Huxley's Prof. Huxley in America (1876)[84]

1859–1930s: Darwin and his legacy

By the 1850s, whether or not species evolved was a subject of intense debate, with prominent scientists arguing both sides of the issue.[85] The publication of Charles Darwin's On the Origin of Species fundamentally transformed the discussion over biological origins.[86] Darwin argued that his branching version of evolution explained a wealth of facts in biogeography, anatomy, embryology, and other fields of biology. He also provided the first cogent mechanism by which evolutionary change could persist: his theory of natural selection.[87]

One of the first and most important naturalists to be convinced by Origin of the reality of evolution was the British anatomist Thomas Henry Huxley. Huxley recognized that unlike the earlier transmutational ideas of Jean-Baptiste Lamarck and Vestiges of the Natural History of Creation, Darwin's theory provided a mechanism for evolution without supernatural involvement, even if Huxley himself was not completely convinced that natural selection was the key evolutionary mechanism. Huxley would make advocacy of evolution a cornerstone of the program of the X Club to reform and professionalise science by displacing natural theology with naturalism and to end the domination of British natural science by the clergy. By the early 1870s in English-speaking countries, thanks partly to these efforts, evolution had become the mainstream scientific explanation for the origin of species.[87] In his campaign for public and scientific acceptance of Darwin's theory, Huxley made extensive use of new evidence for evolution from paleontology. This included evidence that birds had evolved from reptiles, including the discovery of Archaeopteryx in Europe, and a number of fossils of primitive birds with teeth found in North America. Another important line of evidence was the finding of fossils that helped trace the evolution of the horse from its small five-toed ancestors.[88] However, acceptance of evolution among scientists in non-English speaking nations such as France, and the countries of southern Europe and Latin America was slower. An exception to this was Germany, where both August Weismann and Ernst Haeckel championed this idea: Haeckel used evolution to challenge the established tradition of metaphysical idealism in German biology, much as Huxley used it to challenge natural theology in Britain.[89] Haeckel and other German scientists would take the lead in launching an ambitious programme to reconstruct the evolutionary history of life based on morphology and embryology.[90]

Darwin's theory succeeded in profoundly altering scientific opinion regarding the development of life and in producing a small philosophical revolution.[91] However, this theory could not explain several critical components of the evolutionary process. Specifically, Darwin was unable to explain the source of variation in traits within a species, and could not identify a mechanism that could pass traits faithfully from one generation to the next. Darwin's hypothesis of pangenesis, while relying in part on the inheritance of acquired characteristics, proved to be useful for statistical models of evolution that were developed by his cousin Francis Galton and the "biometric" school of evolutionary thought. However, this idea proved to be of little use to other biologists.[92]

Application to humans

 
This illustration was the frontispiece of Thomas Henry Huxley's book Evidence as to Man's Place in Nature (1863). Huxley applied Darwin's ideas to humans, using comparative anatomy to show that humans and apes had a common ancestor, which challenged the theologically important idea that humans held a unique place in the universe.[93]

Charles Darwin was aware of the severe reaction in some parts of the scientific community against the suggestion made in Vestiges of the Natural History of Creation that humans had arisen from animals by a process of transmutation. Therefore, he almost completely ignored the topic of human evolution in On the Origin of Species. Despite this precaution, the issue featured prominently in the debate that followed the book's publication. For most of the first half of the 19th century, the scientific community believed that, although geology had shown that the Earth and life were very old, human beings had appeared suddenly just a few thousand years before the present. However, a series of archaeological discoveries in the 1840s and 1850s showed stone tools associated with the remains of extinct animals. By the early 1860s, as summarized in Charles Lyell's 1863 book Geological Evidences of the Antiquity of Man, it had become widely accepted that humans had existed during a prehistoric period—which stretched many thousands of years before the start of written history. This view of human history was more compatible with an evolutionary origin for humanity than was the older view. On the other hand, at that time there was no fossil evidence to demonstrate human evolution. The only human fossils found before the discovery of Java Man in the 1890s were either of anatomically modern humans or of Neanderthals that were too close, especially in the critical characteristic of cranial capacity, to modern humans for them to be convincing intermediates between humans and other primates.[94]

Therefore, the debate that immediately followed the publication of On the Origin of Species centered on the similarities and differences between humans and modern apes. Carolus Linnaeus had been criticised in the 18th century for grouping humans and apes together as primates in his ground breaking classification system.[95] Richard Owen vigorously defended the classification suggested by Georges Cuvier and Johann Friedrich Blumenbach that placed humans in a separate order from any of the other mammals, which by the early 19th century had become the orthodox view. On the other hand, Thomas Henry Huxley sought to demonstrate a close anatomical relationship between humans and apes. In one famous incident, which became known as the Great Hippocampus Question, Huxley showed that Owen was mistaken in claiming that the brains of gorillas lacked a structure present in human brains. Huxley summarized his argument in his highly influential 1863 book Evidence as to Man's Place in Nature. Another viewpoint was advocated by Lyell and Alfred Russel Wallace. They agreed that humans shared a common ancestor with apes, but questioned whether any purely materialistic mechanism could account for all the differences between humans and apes, especially some aspects of the human mind.[94]

In 1871, Darwin published The Descent of Man, and Selection in Relation to Sex, which contained his views on human evolution. Darwin argued that the differences between the human mind and the minds of the higher animals were a matter of degree rather than of kind. For example, he viewed morality as a natural outgrowth of instincts that were beneficial to animals living in social groups. He argued that all the differences between humans and apes were explained by a combination of the selective pressures that came from our ancestors moving from the trees to the plains, and sexual selection. The debate over human origins, and over the degree of human uniqueness continued well into the 20th century.[94]

Alternatives to natural selection

 
This photo from Henry Fairfield Osborn's 1917 book Origin and Evolution of Life shows models depicting the evolution of Titanothere horns over time, which Osborn claimed was an example of an orthogenetic trend in evolution.[96]

The concept of evolution was widely accepted in scientific circles within a few years of the publication of Origin, but the acceptance of natural selection as its driving mechanism was much less widespread. The four major alternatives to natural selection in the late 19th century were theistic evolution, neo-Lamarckism, orthogenesis, and saltationism. Alternatives supported by biologists at other times included structuralism, Georges Cuvier's teleological but non-evolutionary functionalism, and vitalism.

Theistic evolution was the idea that God intervened in the process of evolution, to guide it in such a way that the living world could still be considered to be designed. The term was promoted by Charles Darwin's greatest American advocate Asa Gray. However, this idea gradually fell out of favor among scientists, as they became more and more committed to the idea of methodological naturalism and came to believe that direct appeals to supernatural involvement were scientifically unproductive. By 1900, theistic evolution had largely disappeared from professional scientific discussions, although it retained a strong popular following.[97][98]

In the late 19th century, the term neo-Lamarckism came to be associated with the position of naturalists who viewed the inheritance of acquired characteristics as the most important evolutionary mechanism. Advocates of this position included the British writer and Darwin critic Samuel Butler, the German biologist Ernst Haeckel, and the American paleontologist Edward Drinker Cope. They considered Lamarckism to be philosophically superior to Darwin's idea of selection acting on random variation. Cope looked for, and thought he found, patterns of linear progression in the fossil record. Inheritance of acquired characteristics was part of Haeckel's recapitulation theory of evolution, which held that the embryological development of an organism repeats its evolutionary history.[97][98] Critics of neo-Lamarckism, such as the German biologist August Weismann and Alfred Russel Wallace, pointed out that no one had ever produced solid evidence for the inheritance of acquired characteristics. Despite these criticisms, neo-Lamarckism remained the most popular alternative to natural selection at the end of the 19th century, and would remain the position of some naturalists well into the 20th century.[97][98]

Orthogenesis was the hypothesis that life has an innate tendency to change, in a unilinear fashion, towards ever-greater perfection. It had a significant following in the 19th century, and its proponents included the Russian biologist Leo S. Berg and the American paleontologist Henry Fairfield Osborn. Orthogenesis was popular among some paleontologists, who believed that the fossil record showed a gradual and constant unidirectional change.

Saltationism was the idea that new species arise as a result of large mutations. It was seen as a much faster alternative to the Darwinian concept of a gradual process of small random variations being acted on by natural selection, and was popular with early geneticists such as Hugo de Vries, William Bateson, and early in his career, Thomas Hunt Morgan. It became the basis of the mutation theory of evolution.[97][98]

 
Diagram from Thomas Hunt Morgan's 1919 book The Physical Basis of Heredity, showing the sex-linked inheritance of the white-eyed mutation in Drosophila melanogaster.

Mendelian genetics, biometrics, and mutation

The rediscovery of Gregor Mendel's laws of inheritance in 1900 ignited a fierce debate between two camps of biologists. In one camp were the Mendelians, who were focused on discrete variations and the laws of inheritance. They were led by William Bateson (who coined the word genetics) and Hugo de Vries (who coined the word mutation). Their opponents were the biometricians, who were interested in the continuous variation of characteristics within populations. Their leaders, Karl Pearson and Walter Frank Raphael Weldon, followed in the tradition of Francis Galton, who had focused on measurement and statistical analysis of variation within a population. The biometricians rejected Mendelian genetics on the basis that discrete units of heredity, such as genes, could not explain the continuous range of variation seen in real populations. Weldon's work with crabs and snails provided evidence that selection pressure from the environment could shift the range of variation in wild populations, but the Mendelians maintained that the variations measured by biometricians were too insignificant to account for the evolution of new species.[99][100]

When Thomas Hunt Morgan began experimenting with breeding the fruit fly Drosophila melanogaster, he was a saltationist who hoped to demonstrate that a new species could be created in the lab by mutation alone. Instead, the work at his lab between 1910 and 1915 reconfirmed Mendelian genetics and provided solid experimental evidence linking it to chromosomal inheritance. His work also demonstrated that most mutations had relatively small effects, such as a change in eye color, and that rather than creating a new species in a single step, mutations served to increase variation within the existing population.[99][100]

1920s–1940s

Biston betularia f. typica is the white-bodied form of the peppered moth
Biston betularia f. carbonaria is the black-bodied form of the peppered moth

Population genetics

The Mendelian and biometrician models were eventually reconciled with the development of population genetics. A key step was the work of the British biologist and statistician Ronald Fisher. In a series of papers starting in 1918 and culminating in his 1930 book The Genetical Theory of Natural Selection, Fisher showed that the continuous variation measured by the biometricians could be produced by the combined action of many discrete genes, and that natural selection could change gene frequencies in a population, resulting in evolution. In a series of papers beginning in 1924, another British geneticist, J. B. S. Haldane, applied statistical analysis to real-world examples of natural selection, such as the evolution of industrial melanism in peppered moths, and showed that natural selection worked at an even faster rate than Fisher assumed.[101][102]

The American biologist Sewall Wright, who had a background in animal breeding experiments, focused on combinations of interacting genes, and the effects of inbreeding on small, relatively isolated populations that exhibited genetic drift. In 1932, Wright introduced the concept of an adaptive landscape and argued that genetic drift and inbreeding could drive a small, isolated sub-population away from an adaptive peak, allowing natural selection to drive it towards different adaptive peaks. The work of Fisher, Haldane and Wright founded the discipline of population genetics. This integrated natural selection with Mendelian genetics, which was the critical first step in developing a unified theory of how evolution worked.[101][102]

The modern synthesis

In the first few decades of the 20th century, most field naturalists continued to believe that alternative mechanisms of evolution such as Lamarckism and orthogenesis provided the best explanation for the complexity they observed in the living world. But as the field of genetics continued to develop, those views became less tenable.[103] Theodosius Dobzhansky, a postdoctoral worker in Thomas Hunt Morgan's lab, had been influenced by the work on genetic diversity by Russian geneticists such as Sergei Chetverikov. He helped to bridge the divide between the foundations of microevolution developed by the population geneticists and the patterns of macroevolution observed by field biologists, with his 1937 book Genetics and the Origin of Species. Dobzhansky examined the genetic diversity of wild populations and showed that, contrary to the assumptions of the population geneticists, these populations had large amounts of genetic diversity, with marked differences between sub-populations. The book also took the highly mathematical work of the population geneticists and put it into a more accessible form. In Britain, E. B. Ford, the pioneer of ecological genetics, continued throughout the 1930s and 1940s to demonstrate the power of selection due to ecological factors including the ability to maintain genetic diversity through genetic polymorphisms such as human blood types. Ford's work would contribute to a shift in emphasis during the course of the modern synthesis towards natural selection over genetic drift.[101][102][104][105]

The evolutionary biologist Ernst Mayr was influenced by the work of the German biologist Bernhard Rensch showing the influence of local environmental factors on the geographic distribution of sub-species and closely related species. Mayr followed up on Dobzhansky's work with the 1942 book Systematics and the Origin of Species, which emphasized the importance of allopatric speciation in the formation of new species. This form of speciation occurs when the geographical isolation of a sub-population is followed by the development of mechanisms for reproductive isolation. Mayr also formulated the biological species concept that defined a species as a group of interbreeding or potentially interbreeding populations that were reproductively isolated from all other populations.[101][102][106]

In the 1944 book Tempo and Mode in Evolution, George Gaylord Simpson showed that the fossil record was consistent with the irregular non-directional pattern predicted by the developing evolutionary synthesis, and that the linear trends that earlier paleontologists had claimed supported orthogenesis and neo-Lamarckism did not hold up to closer examination. In 1950, G. Ledyard Stebbins published Variation and Evolution in Plants, which helped to integrate botany into the synthesis. The emerging cross-disciplinary consensus on the workings of evolution would be known as the modern synthesis. It received its name from the 1942 book Evolution: The Modern Synthesis by Julian Huxley.[101][102]

The modern synthesis provided a conceptual core—in particular, natural selection and Mendelian population genetics—that tied together many, but not all, biological disciplines. It helped establish the legitimacy of evolutionary biology, a primarily historical science, in a scientific climate that favored experimental methods over historical ones.[107] The synthesis also resulted in a considerable narrowing of the range of mainstream evolutionary thought (what Stephen Jay Gould called the "hardening of the synthesis"): by the 1950s, natural selection acting on genetic variation was virtually the only acceptable mechanism of evolutionary change (panselectionism), and macroevolution was simply considered the result of extensive microevolution.[108][109]

1940s–1960s: Molecular biology and evolution

The middle decades of the 20th century saw the rise of molecular biology, and with it an understanding of the chemical nature of genes as sequences of DNA and of their relationship—through the genetic code—to protein sequences. At the same time, increasingly powerful techniques for analyzing proteins, such as protein electrophoresis and sequencing, brought biochemical phenomena into realm of the synthetic theory of evolution. In the early 1960s, biochemists Linus Pauling and Emile Zuckerkandl proposed the molecular clock hypothesis (MCH): that sequence differences between homologous proteins could be used to calculate the time since two species diverged. By 1969, Motoo Kimura and others provided a theoretical basis for the molecular clock, arguing that—at the molecular level at least—most genetic mutations are neither harmful nor helpful and that mutation and genetic drift (rather than natural selection) cause a large portion of genetic change: the neutral theory of molecular evolution.[110] Studies of protein differences within species also brought molecular data to bear on population genetics by providing estimates of the level of heterozygosity in natural populations.[111]

From the early 1960s, molecular biology was increasingly seen as a threat to the traditional core of evolutionary biology. Established evolutionary biologists—particularly Ernst Mayr, Theodosius Dobzhansky, and George Gaylord Simpson, three of the architects of the modern synthesis—were extremely skeptical of molecular approaches, especially when it came to the connection (or lack thereof) to natural selection. The molecular-clock hypothesis and the neutral theory were particularly controversial, spawning the neutralist-selectionist debate over the relative importance of mutation, drift and selection, which continued into the 1980s without a clear resolution.[112][113]

Late 20th century

Gene-centered view

In the mid-1960s, George C. Williams strongly critiqued explanations of adaptations worded in terms of "survival of the species" (group selection arguments). Such explanations were largely replaced by a gene-centered view of evolution, epitomized by the kin selection arguments of W. D. Hamilton, George R. Price and John Maynard Smith.[114] This viewpoint would be summarized and popularized in the influential 1976 book The Selfish Gene by Richard Dawkins.[115] Models of the period seemed to show that group selection was severely limited in its strength; though newer models do admit the possibility of significant multi-level selection.[116]

In 1973, Leigh Van Valen proposed the term "Red Queen," which he took from Through the Looking-Glass by Lewis Carroll, to describe a scenario where a species involved in one or more evolutionary arms races would have to constantly change just to keep pace with the species with which it was co-evolving. Hamilton, Williams and others suggested that this idea might explain the evolution of sexual reproduction: the increased genetic diversity caused by sexual reproduction would help maintain resistance against rapidly evolving parasites, thus making sexual reproduction common, despite the tremendous cost from the gene-centric point of view of a system where only half of an organism's genome is passed on during reproduction.[117][118]

However, contrary to the expectations of the Red Queen hypothesis, Hanley et al. found that the prevalence, abundance and mean intensity of mites was significantly higher in sexual geckos than in asexuals sharing the same habitat.[119] Furthermore, Parker, after reviewing numerous genetic studies on plant disease resistance, failed to find a single example consistent with the concept that pathogens are the primary selective agent responsible for sexual reproduction in their host.[120] At an even more fundamental level, Heng[121] and Gorelick and Heng[122] reviewed evidence that sex, rather than enhancing diversity, acts as a constraint on genetic diversity. They considered that sex acts as a coarse filter, weeding out major genetic changes, such as chromosomal rearrangements, but permitting minor variation, such as changes at the nucleotide or gene level (that are often neutral) to pass through the sexual sieve. The adaptive function of sex, today, remains a major unresolved issue in biology. The competing models to explain the adaptive function of sex were reviewed by Birdsell and Wills.[123] A principal alternative view to the Red Queen hypothesis is that sex arose, and is maintained, as a process for repairing DNA damage, and that genetic variation is produced as a byproduct.[124][125]

The gene-centric view has also led to an increased interest in Charles Darwin's old idea of sexual selection,[126] and more recently in topics such as sexual conflict and intragenomic conflict.

Sociobiology

W. D. Hamilton's work on kin selection contributed to the emergence of the discipline of sociobiology. The existence of altruistic behaviors has been a difficult problem for evolutionary theorists from the beginning.[127] Significant progress was made in 1964 when Hamilton formulated the inequality in kin selection known as Hamilton's rule, which showed how eusociality in insects (the existence of sterile worker classes) and many other examples of altruistic behavior could have evolved through kin selection. Other theories followed, some derived from game theory, such as reciprocal altruism.[128] In 1975, E. O. Wilson published the influential and highly controversial book Sociobiology: The New Synthesis which claimed evolutionary theory could help explain many aspects of animal, including human, behavior. Critics of sociobiology, including Stephen Jay Gould and Richard Lewontin, claimed that sociobiology greatly overstated the degree to which complex human behaviors could be determined by genetic factors. They also claimed that the theories of sociobiologists often reflected their own ideological biases. Despite these criticisms, work has continued in sociobiology and the related discipline of evolutionary psychology, including work on other aspects of the altruism problem.[129][130]

Evolutionary paths and processes

 
A phylogenetic tree showing the three-domain system. Eukaryotes are colored red, archaea green, and bacteria blue.

One of the most prominent debates arising during the 1970s was over the theory of punctuated equilibrium. Niles Eldredge and Stephen Jay Gould proposed that there was a pattern of fossil species that remained largely unchanged for long periods (what they termed stasis), interspersed with relatively brief periods of rapid change during speciation.[131][132] Improvements in sequencing methods resulted in a large increase of sequenced genomes, allowing the testing and refining of evolutionary theories using this huge amount of genome data.[133] Comparisons between these genomes provide insights into the molecular mechanisms of speciation and adaptation.[134][135] These genomic analyses have produced fundamental changes in the understanding of the evolutionary history of life, such as the proposal of the three-domain system by Carl Woese.[136] Advances in computational hardware and software allow the testing and extrapolation of increasingly advanced evolutionary models and the development of the field of systems biology.[137] One of the results has been an exchange of ideas between theories of biological evolution and the field of computer science known as evolutionary computation, which attempts to mimic biological evolution for the purpose of developing new computer algorithms. Discoveries in biotechnology now allow the modification of entire genomes, advancing evolutionary studies to the level where future experiments may involve the creation of entirely synthetic organisms.[138]

Microbiology, horizontal gene transfer, and endosymbiosis

Microbiology was largely ignored by early evolutionary theory. This was due to the paucity of morphological traits and the lack of a species concept in microbiology, particularly amongst prokaryotes.[139] Now, evolutionary researchers are taking advantage of their improved understanding of microbial physiology and ecology, produced by the comparative ease of microbial genomics, to explore the taxonomy and evolution of these organisms.[140] These studies are revealing unanticipated levels of diversity amongst microbes.[141][142]

One important development in the study of microbial evolution came with the discovery in Japan in 1959 of horizontal gene transfer.[143] This transfer of genetic material between different species of bacteria came to the attention of scientists because it played a major role in the spread of antibiotic resistance.[144] More recently, as knowledge of genomes has continued to expand, it has been suggested that lateral transfer of genetic material has played an important role in the evolution of all organisms.[145] These high levels of horizontal gene transfer have led to suggestions that the family tree of today's organisms, the so-called "tree of life," is more similar to an interconnected web or net.[146][147]

Indeed, the endosymbiotic theory for the origin of organelles sees a form of horizontal gene transfer as a critical step in the evolution of eukaryotes such as fungi, plants, and animals.[148][149] The endosymbiotic theory holds that organelles within the cells of eukorytes such as mitochondria and chloroplasts, had descended from independent bacteria that came to live symbiotically within other cells. It had been suggested in the late 19th century when similarities between mitochondria and bacteria were noted, but largely dismissed until it was revived and championed by Lynn Margulis in the 1960s and 1970s; Margulis was able to make use of new evidence that such organelles had their own DNA that was inherited independently from that in the cell's nucleus.[150]

From spandrels to evolutionary developmental biology

In the 1980s and 1990s, the tenets of the modern evolutionary synthesis came under increasing scrutiny. There was a renewal of structuralist themes in evolutionary biology in the work of biologists such as Brian Goodwin and Stuart Kauffman,[151] which incorporated ideas from cybernetics and systems theory, and emphasized the self-organizing processes of development as factors directing the course of evolution. The evolutionary biologist Stephen Jay Gould revived earlier ideas of heterochrony, alterations in the relative rates of developmental processes over the course of evolution, to account for the generation of novel forms, and, with the evolutionary biologist Richard Lewontin, wrote an influential paper in 1979 suggesting that a change in one biological structure, or even a structural novelty, could arise incidentally as an accidental result of selection on another structure, rather than through direct selection for that particular adaptation. They called such incidental structural changes "spandrels" after an architectural feature.[152] Later, Gould and Elisabeth Vrba discussed the acquisition of new functions by novel structures arising in this fashion, calling them "exaptations."[153]

Molecular data regarding the mechanisms underlying development accumulated rapidly during the 1980s and 1990s. It became clear that the diversity of animal morphology was not the result of different sets of proteins regulating the development of different animals, but from changes in the deployment of a small set of proteins that were common to all animals.[154] These proteins became known as the "developmental-genetic toolkit."[155] Such perspectives influenced the disciplines of phylogenetics, paleontology and comparative developmental biology, and spawned the new discipline of evolutionary developmental biology also known as evo-devo.[156]

21st century

Macroevolution and microevolution

One of the tenets of population genetics since its inception has been that macroevolution (the evolution of phylogenic clades at the species level and above) was solely the result of the mechanisms of microevolution (changes in gene frequency within populations) operating over an extended period of time. During the last decades of the 20th century some paleontologists raised questions about whether other factors, such as punctuated equilibrium and group selection operating on the level of entire species and even higher level phylogenic clades, needed to be considered to explain patterns in evolution revealed by statistical analysis of the fossil record. Near the end of the 20th century some researchers in evolutionary developmental biology suggested that interactions between the environment and the developmental process might have been the source of some of the structural innovations seen in macroevolution, but other evo-devo researchers maintained that genetic mechanisms visible at the population level are fully sufficient to explain all macroevolution.[157][158][159]

Epigenetic inheritance

Epigenetics is the study of heritable changes in gene expression or cellular phenotype caused by mechanisms other than changes in the underlying DNA sequence. By the first decade of the 21st century it had become accepted that epigenetic mechanisms were a necessary part of the evolutionary origin of cellular differentiation.[160] Although epigenetics in multicellular organisms is generally thought to be a mechanism involved in differentiation, with epigenetic patterns "reset" when organisms reproduce, there have been some observations of transgenerational epigenetic inheritance. This shows that in some cases nongenetic changes to an organism can be inherited and it has been suggested that such inheritance can help with adaptation to local conditions and affect evolution.[161][162] Some have suggested that in certain cases a form of Lamarckian evolution may occur.[163]

Unconventional evolutionary theory

Omega Point

Pierre Teilhard de Chardin's metaphysical Omega Point theory, found in his book The Phenomenon of Man (1955),[164] describes the gradual development of the universe from subatomic particles to human society, which he viewed as its final stage and goal.[165]

Gaia hypothesis

Teilhard de Chardin's ideas have been seen by advocates of the Gaia hypothesis proposed by James Lovelock, which holds that the living and nonliving parts of Earth can be viewed as a complex interacting system with similarities to a single organism,[166] as being connected to Lovelock's ideas.[167] The Gaia hypothesis has also been viewed by Lynn Margulis[168] and others as an extension of endosymbiosis and exosymbiosis.[169] This modified hypothesis postulates that all living things have a regulatory effect on the Earth's environment that promotes life overall.

Extended Evolutionary Synthesis

The extended evolutionary synthesis (EES) is an extension of the Modern Synthesis of evolution which revisits the relative importance of different factors at play in evolutionary theory. EES includes concepts and mechanisms such as multilevel selection theory, transgenerational epigenetic inheritance, niche construction and evolvability.

Self-organization

The mathematical biologist Stuart Kauffman has suggested that self-organization may play roles alongside natural selection in three areas of evolutionary biology, namely population dynamics, molecular evolution, and morphogenesis.[170] However, Kauffman does not take into account the essential role of energy (for example, using pyrophosphate) in driving biochemical reactions in cells, as proposed by Christian DeDuve and modelled mathematically by Richard Bagley and Walter Fontana. Their systems are self-catalyzing but not simply self-organizing as they are thermodynamically open systems relying on a continuous input of energy.[171]

See also

Notes

  1. ^ Not in phylogeny: Empedocles did not have any conception of evolution through geological time.

References

  1. ^ Haeckel 1879,第189, Plate XV: "Pedigree of Man"頁
  2. ^ Haeckel 1879,第189, Plate XV: "Pedigree of Man"頁
  3. ^ Moran, Laurence A. Random Genetic Drift. What is Evolution?. Toronto, Canada: 多倫多大學. 2006 [2015-09-27]. 
  4. ^ 4.0 4.1 Futuyma, Douglas J. (编). Evolution, Science, and Society: Evolutionary Biology and the National Research Agenda (PDF) (Executive summary). New Brunswick, NJ: Office of University Publications, 罗格斯大学. 1999 [2014-10-24]. OCLC 43422991. (原始内容 (PDF)存档于2012-01-31).  and Futuyma, Douglas J.; Meagher, Thomas R. (编). Evolution, Science and Society: Evolutionary Biology and the National Research Agenda. California Journal of Science Education. 2001, 1 (2): 19–32 [2014-10-24].  引用错误:带有name属性“Futuyma”的<ref>标签用不同内容定义了多次
  5. ^ Moran, Laurence A. Random Genetic Drift. What is Evolution?. Toronto, Canada: University Toronto. 2006 [2015-09-27]. 
  6. ^ Kirk, Raven & Schofield (1983:140–142頁)
  7. ^ Kirk, Raven & Schofield (1983:291–292頁)
  8. ^ Kirk, Raven & Schofield (1983:304頁)
  9. ^ Mayr 1982,第304頁
  10. ^ 10.0 10.1 10.2 10.3 10.4 10.5 Johnston 1999"Section Three: The Origins of Evolutionary Theory"
  11. ^ 11.0 11.1 Wilkins, John. Species, Kinds, and Evolution. Reports of the National Center for Science Education. July–August 2006, 26 (4): 36–45 [2011-09-23]. 
  12. ^ 12.0 12.1 Singer 1931
  13. ^ Boylan, Michael. Aristotle: Biology. Internet Encyclopedia of Philosophy. Martin, TN: University of Tennessee at Martin. September 26, 2005 [2011-09-25]. OCLC 37741658. 
  14. ^ Aristotle. Physics. Translated by R. P. Hardie and R. K. Gaye. The Internet Classics Archive. . Book II [2008-07-15]. OCLC 54350394. 
  15. ^ 15.0 15.1 Bowler 2000,第44–46頁
  16. ^ 16.0 16.1 Cicero. De Natura Deorum. Digital Loeb Classical Library LCL268 (Cambridge, MA: Harvard University Press). : 179 (2.22). OCLC 890330258. 
  17. ^ Ronan 1995,第101頁
  18. ^ Miller, James. Daoism and Nature (PDF). [2014-10-26]. (原始内容 (PDF)存档于2008-12-16).  "Notes for a lecture delivered to the Royal Asiatic Society, Shanghai on January 8, 2008"
  19. ^ Sedley, David. Lucretius. Zalta, Edward N (编). Stanford Encyclopedia of Philosophy Fall 2013. Stanford, CA: Stanford University. August 10, 2013 [2014-10-26]. 
  20. ^ Simpson, David. Lucretius. Internet Encyclopedia of Philosophy. Martin, TN: University of Tennessee at Martin. 2006 [2014-10-26]. OCLC 37741658. 
  21. ^ St. Augustine 1982,第89–90頁
  22. ^ Gill 2005,第251頁
  23. ^ Owen, Richard. Vatican buries the hatchet with Charles Darwin. Times Online (London: News UK). February 11, 2009 [2009-02-12]. (原始内容存档于2009-02-16). 
  24. ^ Irvine, Chris. The Vatican claims Darwin's theory of evolution is compatible with Christianity. The Daily Telegraph (London: Telegraph Media Group). February 11, 2009 [2014-10-26]. 
  25. ^ Osborn 1905,第7, 69–70頁
  26. ^ White 1922,第42頁
  27. ^ White 1922,第53頁
  28. ^ Waggoner, Ben. Medieval and Renaissance Concepts of Evolution and Paleontology. University of California Museum of Paleontology. [2010-03-11]. 
  29. ^ Zirkle, Conway. Natural Selection before the 'Origin of Species'. Proceedings of the American Philosophical Society. April 25, 1941, 84 (1): 71–123. JSTOR 984852. 
  30. ^ Egerton, Frank N. A History of the Ecological Sciences, Part 6: Arabic Language Science—Origins and Zoological Writings (PDF). Bulletin of the Ecological Society of America. April 2002, 83 (2): 142–146 [2014-10-28]. 
  31. ^ 31.0 31.1 Kiros 2001,第55頁
  32. ^ Ibn Khaldūn 1967Chapter 1: "Sixth Prefatory Discussion"
  33. ^ Ibn Khaldūn 1967Chapter 6, Part 5: "The sciences (knowledge) of the prophets"
  34. ^ 34.0 34.1 34.2 34.3 Alakbarli, Farid. A 13th-Century Darwin? Tusi's Views on Evolution. Azerbaijan International. Summer 2001, 9 (2): 48–49. 
  35. ^ Lovejoy 1936,第67–80頁
  36. ^ Carroll, William E. Creation, Evolution, and Thomas Aquinas. Revue des Questions Scientifiques. 2000, 171 (4) [2014-10-28]. 
  37. ^ Aquinas 1963Book II, Lecture 14
  38. ^ Bowler 2003,第33–38頁
  39. ^ Bowler 2003,第72頁
  40. ^ Schelling 1978
  41. ^ Bowler 2003,第73–75頁
  42. ^ Bowler 2003,第41–42頁
  43. ^ Pallen 2009,第66頁
  44. ^ Bowler 2003,第75–80頁
  45. ^ Larson 2004,第14–15頁
  46. ^ Bowler 2003,第82–83頁
  47. ^ Henderson 2000
  48. ^ Darwin 1794–1796Vol I, section XXXIX
  49. ^ Darwin 1803,Canto I (lines 295–302)
  50. ^ Owen 1861,第5, Fig. 1: "Table of Strata"頁
  51. ^ Larson 2004,第7頁
  52. ^ Mathez 2001"Profile: James Hutton: The Founder of Modern Geology": "...we find no vestige of a beginning, no prospect of an end."
  53. ^ Bowler 2003,第113頁
  54. ^ Larson 2004,第29–38頁
  55. ^ Bowler 2003,第115–116頁
  56. ^ Darwin and design. Darwin Correspondence Project. Cambridge, UK: University of Cambridge. [2014-10-28]. (原始内容存档于2014-10-21). 
  57. ^ 57.0 57.1 Bowler 2003,第129–134頁
  58. ^ Bowler 2003,第86–94頁
  59. ^ Larson 2004,第38–41頁
  60. ^ Desmond & Moore 1991,第40頁
  61. ^ 61.0 61.1 Bowler 2003,第120–129頁
  62. ^ Bowler 2003,第134–138頁
  63. ^ Bowler & Morus 2005,第142–143頁
  64. ^ Larson 2004,第5–24頁
  65. ^ Russell 1916,第105, Fig. 6: "The Archetype of the Vertebrate Skeleton. (After Owen.)" [Edited]頁
  66. ^ Bowler 2003,第103–104頁
  67. ^ Larson 2004,第37–38頁
  68. ^ Bowler 2003,第138頁
  69. ^ Larson 2004,第42–46頁
  70. ^ 70.0 70.1 van Wyhe, John. Mind the gap: Did Darwin avoid publishing his theory for many years?. Notes and Records of the Royal Society. May 2007, 61 (2): 177–205 [2009-11-17]. doi:10.1098/rsnr.2006.0171. 
  71. ^ Bowler 2003,第19–21, 40頁
  72. ^ Desmond & Moore 1991,第247–248頁
  73. ^ Bowler 2003,第151頁
  74. ^ Darwin 1859,第62
  75. ^ Darwin 1861,第xiii
  76. ^ Darwin 1866,第xiv
  77. ^ Matthew, Patrick. Nature's law of selection. The Gardeners' Chronicle and Agricultural Gazette. April 7, 1860: 312–313 [2007-11-01]. 
  78. ^ Darwin 1861,第xiv
  79. ^ Bowler 2003,第158頁
  80. ^ Huxley, Thomas Henry. On the Reception of the 'Origin of Species'. Project Gutenberg. [2014-10-29]. 
  81. ^ Bowler & Morus 2005,第129–149頁
  82. ^ Larson 2004,第55–71頁
  83. ^ Bowler 2003,第173–176頁
  84. ^ Huxley 1876,第32頁
  85. ^ Larson 2004,第50頁
  86. ^ Secord 2000,第515–518頁: "The centrality of Origin of Species in the rise of widespread evolutionary thinking has long been accepted by historians of science. However, some scholars have recently begun to challenge this idea. James A. Secord, in his study of the impact of Vestiges of the Natural History of Creation, argues that in some ways Vestiges had as much or more impact than Origin, at least into the 1880s. Focusing so much on Darwin and Origin, he argues, "obliterates decades of labor by teachers, theologians, technicians, printers, editors, and other researchers, whose work has made evolutionary debates so significant during the past two centuries."
  87. ^ 87.0 87.1 Larson 2004,第79–111頁
  88. ^ Larson 2004,第139–40頁
  89. ^ Larson 2004,第109–110頁
  90. ^ Bowler 2003,第190–191頁
  91. ^ Bowler 2003,第177–223頁
  92. ^ Larson 2004,第121–123, 152–157頁
  93. ^ Bowler & Morus 2005,第154–155頁
  94. ^ 94.0 94.1 94.2 Bowler 2003,第207–216頁
  95. ^ Bowler 2003,第49–51頁
  96. ^ Osborn 1917,第264, Fig. 128: "Stages in the Evolution of the Horn in the Titanothere"頁
  97. ^ 97.0 97.1 97.2 97.3 Larson 2004,第105–129頁
  98. ^ 98.0 98.1 98.2 98.3 Bowler 2003,第196–253頁
  99. ^ 99.0 99.1 Bowler 2003,第256–273頁
  100. ^ 100.0 100.1 Larson 2004,第153–174頁
  101. ^ 101.0 101.1 101.2 101.3 101.4 Bowler 2003,第325–339頁
  102. ^ 102.0 102.1 102.2 102.3 102.4 Larson 2004,第221–243頁
  103. ^ Mayr & Provine 1998,第295–298, 416頁
  104. ^ Mayr 1988,第402頁
  105. ^ Mayr & Provine 1998,第338–341頁
  106. ^ Mayr & Provine 1998,第33–34頁
  107. ^ Smocovitis 1996,第97–188頁
  108. ^ Sapp 2003,第152–156頁
  109. ^ Gould 1983
  110. ^ Dietrich, Michael R. The origins of the neutral theory of molecular evolution. Journal of the History of Biology. Spring 1994, 27 (1): 21–59. JSTOR 4331295. PMID 11639258. doi:10.1007/BF01058626. 
  111. ^ Powell 1994,第131–156頁
  112. ^ Dietrich, Michael R. Paradox and Persuasion: Negotiating the Place of Molecular Evolution within Evolutionary Biology. Journal of the History of Biology. Spring 1998, 31 (1): 85–111. JSTOR 4331466. PMID 11619919. doi:10.1023/A:1004257523100. 
  113. ^ Hagen, Joel B. Naturalists, Molecular Biologists, and the Challenges of Molecular Evolution. Journal of the History of Biology. Autumn 1999, 32 (2): 321–341. JSTOR 4331527. PMID 11624208. doi:10.1023/A:1004660202226. 
  114. ^ Mayr, Ernst. The objects of selection. PNAS USA. March 18, 1997, 94 (6): 2091–2094 [2014-10-30]. Bibcode:1997PNAS...94.2091M. PMC 33654 . PMID 9122151. doi:10.1073/pnas.94.6.2091. 
  115. ^ Bowler 2003,第361頁
  116. ^ Gould, Stephen Jay. Gulliver's further travels: the necessity and difficulty of a hierarchical theory of selection. Philosophical Transactions of the Royal Society B. February 28, 1998, 353 (1366): 307–314. PMC 1692213 . PMID 9533127. doi:10.1098/rstb.1998.0211. 
  117. ^ Larson 2004,第279頁
  118. ^ Bowler 2003,第358頁
  119. ^ Hanley, Kathryn A.; Fisher, Robert N.; Case, Ted J. Lower Mite Infestations in an Asexual Gecko Compared With Its Sexual Ancestors. Evolution. June 1995, 49 (3): 418–426. JSTOR 2410266. doi:10.2307/2410266. 
  120. ^ Parker, Matthew A. Pathogens and sex in plants. Evolutionary Ecology. September 1994, 8 (5): 560–584. doi:10.1007/BF01238258. 
  121. ^ Heng, Henry H.Q. Elimination of altered karyotypes by sexual reproduction preserves species identity. Genome. May 2007, 50 (5): 517–524. PMID 17612621. doi:10.1139/g07-039. 
  122. ^ Gorelick, Root; Heng, Henry H.Q. Sex reduces genetic variation: a multidisciplinary review. Evolution. April 2011, 65 (4): 1088–1098. PMID 21091466. doi:10.1111/j.1558-5646.2010.01173.x. 
  123. ^ Birdsell & Wills 2003,第27–137頁
  124. ^ Bernstein, Hopf & Michod 1987,第323–370頁
  125. ^ Bernstein, Bernstein & Michod 2012,第1–49頁
  126. ^ Bowler 2003,第358–359頁
  127. ^ Sachs, Joel L. Cooperation within and among species. Journal of Evolutionary Biology. September 2006, 19 (5): 1415–1418; discussion 1426–1436. PMID 16910971. doi:10.1111/j.1420-9101.2006.01152.x. 
  128. ^ Nowak, Martin A. Five rules for the evolution of cooperation. Science. December 8, 2006, 314 (5805): 1560–1563. Bibcode:2006Sci...314.1560N. PMC 3279745 . PMID 17158317. doi:10.1126/science.1133755. 
  129. ^ Larson 2004,第270–278頁
  130. ^ Bowler 2003,第359–361頁
  131. ^ Eldredge & Gould 1972,第82–115頁
  132. ^ Gould, Stephen Jay. Tempo and mode in the macroevolutionary reconstruction of Darwinism (PDF). PNAS USA. July 19, 1994, 91 (15): 6764–6771 [2014-11-02]. Bibcode:1994PNAS...91.6764G. PMC 44281 . PMID 8041695. doi:10.1073/pnas.91.15.6764. 
  133. ^ Pollock, David D.; Eisen, Jonathan A.; Doggett, Norman A.; Cummings, Michael P. A case for evolutionary genomics and the comprehensive examination of sequence biodiversity. Molecular Biology and Evolution. December 2000, 17 (12): 1776–1788. PMID 11110893. doi:10.1093/oxfordjournals.molbev.a026278. 
  134. ^ Koonin, Eugene V. Orthologs, paralogs, and evolutionary genomics. Annual Review of Genetics. December 2005, 39: 309–338. OCLC 62878927. PMID 16285863. doi:10.1146/annurev.genet.39.073003.114725. 
  135. ^ Hegarty, Matthew J.; Hiscock, Simon J. Hybrid speciation in plants: new insights from molecular studies. New Phytologist. February 2005, 165 (2): 411–423. PMID 15720652. doi:10.1111/j.1469-8137.2004.01253.x. 
  136. ^ Woese, Carl R.; Kandler, Otto; Wheelis, Mark L. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya (PDF). PNAS USA. June 1, 1990, 87 (12): 4576–4579 [2014-11-04]. Bibcode:1990PNAS...87.4576W. PMC 54159 . PMID 2112744. doi:10.1073/pnas.87.12.4576. 
  137. ^ Medina, Mónica. Genomes, phylogeny, and evolutionary systems biology. PNAS USA. May 3, 2005, 102 (Suppl 1): 6630–6635. Bibcode:2005PNAS..102.6630M. PMC 1131869 . PMID 15851668. doi:10.1073/pnas.0501984102. 
  138. ^ Benner, Steven A.; Sismour, A. Michael. Synthetic biology. Nature Reviews Genetics. July 2005, 6 (7): 533–543. PMID 15995697. doi:10.1038/nrg1637. 
  139. ^ Gevers, Dirk; Cohan, Frederick M.; Lawrence, Jeffrey G.; et al. Opinion: Re-evaluating prokaryotic species. Nature Reviews Microbiology. September 2005, 3 (9): 733–739. PMID 16138101. doi:10.1038/nrmicro1236. 
  140. ^ Coenye, Tom; Gevers, Dirk; Van de Peer, Yves; Vandamme, Peter; Swings, Jean. Towards a prokaryotic genomic taxonomy. FEMS Microbiology Reviews. April 2005, 29 (2): 147–167. PMID 15808739. doi:10.1016/j.femsre.2004.11.004. 
  141. ^ Whitman, William B.; Coleman, David C.; Wiebe, William J. Prokaryotes: The unseen majority. Proc. Natl. Acad. Sci. U.S.A. June 9, 1998, 95 (12): 6578–6583 [2014-11-04]. Bibcode:1998PNAS...95.6578W. PMC 33863 . PMID 9618454. doi:10.1073/pnas.95.12.6578. 
  142. ^ Schloss, Patrick D.; Handelsman, Jo. Status of the Microbial Census. Microbiology and Molecular Biology Reviews. December 2004, 68 (4): 686–691. PMC 539005 . PMID 15590780. doi:10.1128/MMBR.68.4.686-691.2004. 
  143. ^ Ochiai, K.; Yamanaka, T.; Kimura, K.; Sawada, O. Inheritance of drug resistance (and its transfer) between Shigella strains and Between Shigella and E.coli strains. Hihon Iji Shimpor. 1959, 1861: 34 (Japanese). 
  144. ^ Ochman, Howard; Lawrence, Jeffrey G.; Groisman, Eduardo A. Lateral gene transfer and the nature of bacterial innovation (PDF). Nature. May 18, 2000, 405 (6784): 299–304 [2007-09-01]. PMID 10830951. doi:10.1038/35012500. 
  145. ^ de la Cruz, Fernando; Davies, Julian. Horizontal gene transfer and the origin of species: lessons from bacteria. Trends in Microbiology. March 2000, 8 (3): 128–133. PMID 10707066. doi:10.1016/S0966-842X(00)01703-0. 
  146. ^ Kunin, Victor; Goldovsky, Leon; Darzentas, Nikos; Ouzounis, Christos A. The net of life: Reconstructing the microbial phylogenetic network. Genome Research. July 2005, 15 (7): 954–959 [2014-11-04]. PMC 1172039 . PMID 15965028. doi:10.1101/gr.3666505. 
  147. ^ Doolittle, W. Ford; Bapteste, Eric. Pattern pluralism and the Tree of Life hypothesis. PNAS USA. February 13, 2007, 104 (7): 2043–2049 [2014-11-04]. Bibcode:2007PNAS..104.2043D. PMC 1892968 . PMID 17261804. doi:10.1073/pnas.0610699104. 
  148. ^ Poole, Anthony M.; Penny, David. Evaluating hypotheses for the origin of eukaryotes. BioEssays. January 2007, 29 (1): 74–84. PMID 17187354. doi:10.1002/bies.20516. 
  149. ^ Dyall, Sabrina D.; Brown, Mark T.; Johnson, Patricia J. Ancient Invasions: From Endosymbionts to Organelles. Science. April 9, 2004, 304 (5668): 253–257. Bibcode:2004Sci...304..253D. PMID 15073369. doi:10.1126/science.1094884. 
  150. ^ Endosymbiosis: Lynn Margulis. Understanding Evolution. Berkeley, CA: University of California, Berkeley. [2010-02-20]. 
  151. ^ Kauffman 1993,第passim頁
  152. ^ Gould, Stephen Jay. The exaptive excellence of spandrels as a term and prototype. PNAS USA. September 30, 1997, 94 (20): 10750–10755. Bibcode:1997PNAS...9410750G. PMC 23474 . PMID 11038582. doi:10.1073/pnas.94.20.10750. 
  153. ^ Gould, Stephen Jay; Vrba, Elisabeth S. Exaptation—a missing term in the science of form (PDF). Paleobiology. Winter 1982, 8 (1): 4–15 [2014-11-04]. JSTOR 2400563. 
  154. ^ True, John R.; Carroll, Sean B. Gene co-option in physiological and morphological evolution. Annual Review of Cell and Developmental Biology. November 2002, 18: 53–80. PMID 12142278. doi:10.1146/annurev.cellbio.18.020402.140619. 
  155. ^ Cañestro, Cristian; Yokoi, Hayato; Postlethwait, John H. Evolutionary developmental biology and genomics. Nature Reviews Genetics. December 2007, 8 (12): 932–942. PMID 18007650. doi:10.1038/nrg2226. 
  156. ^ Baguñà, Jaume; Garcia-Fernàndez, Jordi. Evo-Devo: the long and winding road. The International Journal of Developmental Biology. 2003, 47 (7–8): 705–713 [2014-11-04]. PMID 14756346. 
  157. ^ Erwin, Douglas H. Macroevolution is more than repeated rounds of microevolution. Evolution & Development. March–April 2000, 2 (2): 78–84. doi:10.1046/j.1525-142x.2000.00045.x. 
  158. ^ Newman, Stuart A.; Müller, Gerd B. Epigenetic mechanisms of character origination. Journal of Experimental Zoology. December 2000, 288 (4): 304–317. doi:10.1002/1097-010X(20001215)288:4<304::AID-JEZ3>3.0.CO;2-G. 
  159. ^ Carroll, Sean B. The big picture. Nature. February 8, 2001, 409 (6821): 669. PMID 11217840. doi:10.1038/35055637. 
  160. ^ Stearns & Hoekstra 2000,第285頁
  161. ^ Roberts, Christina. Epigenetics and Evolution. South Florida University. [2010-02-21].  [失效連結]
  162. ^ Rapp, Ryan A.; Wendell, Jonathan F. Epigenetics and plant evolution. New Phytologist. October 2005, 168 (1): 81–91. PMID 16159323. doi:10.1111/j.1469-8137.2005.01491.x. 
  163. ^ Singer, Emily. A Comeback for Lamarckian Evolution?. technologyreview.com. Cambridge, MA: Technology Review, Inc. February 4, 2009 [2014-11-05]. 
  164. ^ Teilhard de Chardin 1959
  165. ^ Castillo, Mauricio. The Omega Point and Beyond: The Singularity Event (PDF). American Journal of Neuroradiology. March 2012, 33 (3): 393–395 [2015-06-06]. PMID 21903920. doi:10.3174/ajnr.A2664. 
  166. ^ Lovelock, James. Gaia: the living Earth. Nature. December 18, 2003, 426 (6968): 769–770. Bibcode:2003Natur.426..769L. PMID 14685210. doi:10.1038/426769a. 
  167. ^ Litfin, Karen. Gaia theory: intimations for global environmental politics (PDF). Seattle, WA: University of Washington. [2012-06-04]. 
  168. ^ Brockman 1995Chapter 7: "Gaia Is a Tough Bitch"
  169. ^ Fox, Robin. Symbiogenesis. Journal of the Royal Society of Medicine. December 2004, 97 (12): 559 [2014-11-05]. PMC 1079665 . PMID 15574850. doi:10.1258/jrsm.97.12.559. (原始内容存档于2016-01-27). 
  170. ^ Kauffman 1993,第passim頁
  171. ^ Fox, Ronald F. Review of Stuart Kauffman, The Origins of Order: Self-Organization and Selection in Evolution. Biophysical Journal. December 1993, 65 (6): 2698–2699. PMC 1226010 . 

Bibliography

Further reading


 
德國生物學家恩斯特·海克爾人類的進化(1879年)一書中所描述的“生命之樹”說明了19世紀進化論的觀點,即是人類的進化是一個漸進而漫長的過程。

演化思想是對於生物個體在不同世代之間具有差異的現象所做的一種解釋,最早起源可追溯至古希臘古羅馬時代。此外古代中國雖然也有類似演化宇宙觀,但是並沒有用來直接描述生命的變化。公元前6世紀,古希臘學者阿那克西曼德提出人類的祖先來自海中的理論。

科學式的演化論述則一直要到18世紀與19世紀才出現,例如蒙博杜(Lord Monboddo)與伊拉斯謨斯·達爾文(Erasmus Darwin,達爾文的祖父),提出所有生命源自共同祖先的想法。而第一個科學假說是由拉馬克在1809年所提出,他認為演化是來自後天獲得特徵的遺傳。拉馬克學說在提出後將近50年,才被達爾文華萊士較接近現代觀念的理論所取代。其中達爾文做了較多細節上的討論,例如1859年出版的《物種源起》。達爾文強調生物的演化為事實,並以天擇機制作為解釋演化現象的理論。

達爾文在提出演化論時並不知道遺傳機制如何運作,而孟德爾在1865年發表的遺傳定律則一直受到忽略。直到20世紀,達爾文的天擇理論與孟德爾的遺傳學才結合為現今所熟知的現代綜合理論。隨後科學家發現基因為遺傳物質,並發現基因由DNA所構成。現在的演化研究以基因為中心,並發展出許多相關學門。

古代

希臘人

希臘化時代具有生物演化的思想的學者中,較為著名的有阿那克西曼德恩培多克勒德謨克利特伊比鳩魯。阿那克西曼德(約前610年-前546年)最先提岀一種動物,包括人類,可能是其他種類的動物的後裔。他指出第一個人類必然是其他動物的孩子,因為人類孩提時需要長時間的照顧。[1]

罗马

中国

中世纪

在13世纪,一名波斯的科学家纳西尔丁·图西认为生物是由进化而来。他认为,元素进化成了矿物,矿物进化成了植物,植物又进化成了动物和人类。他也提出了适者生存的生物理论。

1850年以前

在公元前400年,希臘的原子論者便認為太陽、地球、生命、人類、文明與社會,皆不需要神蹟(divine intervention)就可產生。公元前60年,羅馬的原子論者盧克萊修寫下了一首詩,稱做《物性論》(On the Nature of Things),其中描述

1859-1930年代:达尔文进化论

在1850年代以前,人们关于物种是否由进化而成依然争论不休,没有任何一种理论具有绝对的说服力。[2]直到达尔文的著作<<物种起源>>(1859)的问世才根本地改变了这种局面.[3]达尔文认为他的演化的分支理论可以很好地解释大量生物地理学,解剖学,胚胎学,和生物学现象。他同时提供了一个极有说服力的机制来说明生物演化得以保存下来的原因,也就是他的自然选择natural selection),也被称为"物竞天择"。

首先站出来认同达尔文理论的自然学者是英国解剖学家托马斯·亨利·赫胥黎(Thomas Henry Huxley)。赫胥黎认为,不同于先前的拉马克(Larmarck)突变理论,达尔文提供了一种没有超自然力量介入的演化机制,即使赫胥黎本人并没有完全被”物竞天择”理论说服。在赫胥黎倡导下成立了X Club旨在,在专门的自然科学领域增进实证的自然哲学方法而摒弃神学对自然科学的影响。由于这些不懈的努力,在1870年代中叶以前,达尔文的演化论成为了英语国家科学领域对于物种起源解释的主流。[4]在赫胥黎随后提供的大量古生物证据面前,公众和科学界接受了达尔文理论。这些证据包括了鸟类从爬行类动物演化而来的证据,始祖鸟在欧洲的发现,以及大量原始鸟类化石在北美洲的发现。另一些重要证据是对于马从其五趾祖先演化而来的化石证据[5] 然而相比于英语国家,非英语国家,比如法国和其他南欧国家,接受达尔文理论的时间要稍晚。唯一例外的是德国,德国人August WeismannErnst Haeckel 就极力拥护达尔文理论。Haeckel用演化论挑战了在德意志生物学中的传统形而上学理论,就像在英国发生的情况一样。[6]在Haeckel和其他德国科学家的领导下实施了一个野心勃勃的计划,该计划旨在基于生物形态学(Biological morphology)和胚胎学(Embryology)来重构生命演化的历史。[7]

达尔文理论的成功深深地影响了科学界对于生命的理解,同时也激起了一场小规模的哲学革命。[8]然而,此理论仍然不能解释一些演化过程中的重要组成部分。尤其无法解释同一物种内的差别以及无法解释是物种是以何种机制把这种差别传播到下一代(也就是遗传机制)。达尔文的泛生论的假设也仅仅对演化的统计模型,例如”生物计量学”学派的有一些用处,对于其他生物学家而言几乎毫无意义。[9]

20世紀初期

現代綜合理論成形

分子生物學的發展

基因中心觀點與疾變平衡論

演化生物學

參考文獻

  1. ^ Kirk; Raven; Schofield (1983). The Presocratic Philosophers (2 ed.). Cambridge University Press
  2. ^ Larson 2004,第50頁
  3. ^ The centrality of Origin of Species in the rise of widespread evolutionary thinking has been has long been accepted by historians of science. However, some scholars have recently begun to challenge this idea. James A. Secord, in his study of the impact of Vestiges of the Natural History of Creation, argues that in some ways Vestiges had as much or more impact than Origin, at least into the 1880s. Focusing so much on Darwin and Origin, he argues, "obliterates decades of labor by teachers, theologians, technicians, printers, editors, and other researchers, whose work has made evolutionary debates so significant during the past two centuries." Secord 2000,第515–518頁
  4. ^ Larson 2004,第79-111頁
  5. ^ Larson 2004,第139–40頁
  6. ^ Larson 2004,第109–110頁
  7. ^ Bowler 2003,第190–191頁
  8. ^ Bowler 2003,第177–223頁
  9. ^ Larson 2004,第121–123, 152–157頁

相關書籍

{{科學哲學}} {{生物学史}}